A curated collection of workflows for processing omics data

PacBio

Analyze human PacBio whole genome sequencing (WGS) data to produce sequence alignment and variant calls for a sample or cohort.

alignment fastq genome hifi

Run

Illumina

Align reads to the reference genome, call variants, and calculate quality metrics using Sentieon.

alignment germline variants wgs

Run

Illumina

DRAGEN functional equivalence germline SNP and indel discovery in human whole genome sequencing data.

dragen

Run

Oxford Nanopore PacBio

Perform alignment and variant calling for SNPs, small indels, and structural variants using Sentieon.

alignment fastq long-read sentieon variants wgs

Run

Illumina

Compare tumor/normal samples and call somatic variants using Sentieon.

alignment normal tumor variants

Run

Workflows