A curated collection of workflows for processing omics data

Whole Genome Sequencing Variant Pipeline

Analyze human PacBio whole genome sequencing (WGS) data to produce sequence alignment and variant calls for a sample or cohort.

alignment fastq genome hifi

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Sentieon Germline Whole Genome Sequencing Analysis

Illumina

Align reads to the reference genome, call variants, and calculate quality metrics using Sentieon.

alignment germline variants wgs

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HiFi Target Enrichment

PacBio

Analyze targeted HiFi sequence datasets using PacBio read data. Call and phase small and structural variants.

alignment fastq genome hifi

Human de novo Assembly

PacBio

Generate de novo assemblies from PacBio read data. Supports single-sample and trio-based assemblies.

alignment fastq genome hifi

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DRAGEN - Whole Genome Germline Single Sample Analysis

Illumina

DRAGEN functional equivalence germline SNP and indel discovery in human whole genome sequencing data.

dragen

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Sentieon Long Read Germline Whole Genome Sequencing Analysis

Oxford Nanopore PacBio

Perform alignment and variant calling for SNPs, small indels, and structural variants using Sentieon.

alignment fastq long-read sentieon variants wgs

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Sentieon Somatic Variant Calling

Illumina

Compare tumor/normal samples and call somatic variants using Sentieon.

alignment normal tumor variants

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Metagenome-Assembled Genomes

PacBio

Identify high-quality metagenome-assembled genomes (MAGs) from PacBio HiFi data.

assembly hifi mag metagenomics

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Workflows

An App Store for Omics

Workflows by Instrument

PacBio

Oxford Nanopore

Illumina

Featured Workflows

Whole Genome Sequencing Variant Pipeline

Sentieon Germline Whole Genome Sequencing Analysis

HiFi Target Enrichment

Human de novo Assembly

DRAGEN - Whole Genome Germline Single Sample Analysis

Sentieon Long Read Germline Whole Genome Sequencing Analysis

Sentieon Somatic Variant Calling

Metagenome-Assembled Genomes